3V10

Crystal structure of the collagen binding domain of Erysipelothrix rhusiopathiae surface protein RspB


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Collagen adhesin-nanoparticle interaction impairs adhesin's ligand binding mechanism

Devi, A.S.Ogawa, Y.Shimoji, Y.Balakumar, S.Ponnuraj, K.

(2012) Biochim.Biophys.Acta 1820: 819-828

  • DOI: 10.1016/j.bbagen.2012.04.006

  • PubMed Abstract: 
  • Pathogenic bacteria specifically recognize extracellular matrix (ECM) molecules of the host (e.g. collagen, fibrinogen and fibronectin) through their surface proteins known as MSCRAMMs (Microbial Surface Components Recognizing Adhesive Matrix Molecul ...

    Pathogenic bacteria specifically recognize extracellular matrix (ECM) molecules of the host (e.g. collagen, fibrinogen and fibronectin) through their surface proteins known as MSCRAMMs (Microbial Surface Components Recognizing Adhesive Matrix Molecules) and initiate colonization. On implantation, biomaterials easily get coated with these ECM molecules and the MSCRAMMs mediate bacterial adherence to biomaterials. With the rapid rise in antibiotic resistance, designing alternative strategies to reduce/eliminate bacterial colonization is absolutely essential.


    Organizational Affiliation

    Centre of Advanced Study in Crystallography and Biophysics, University of Madras, Guindy Campus, Chennai-600 025, India.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Rhusiopathiae surface protein B
A, B
321Erysipelothrix rhusiopathiaeMutation(s): 0 
Gene Names: rspB
Find proteins for Q83VG5 (Erysipelothrix rhusiopathiae)
Go to UniProtKB:  Q83VG5
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.225 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 46.170α = 90.00
b = 67.390β = 92.82
c = 102.410γ = 90.00
Software Package:
Software NamePurpose
Auto-Rickshawphasing
CNSrefinement
SCALAdata scaling
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-10-24
    Type: Initial release