3UYB

X-ray crystal structure of the ruthenium complex [Ru(tap)2(dppz)]2+ bound to d(TCGGTACCGA)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.127 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of lambda-[Ru(TAP)2(dppz)]2+ with d(TCGGTACCGA)2 displaying kinking of DNA via semiintercalation.

Niyazi, H.N.O'Sullivan, K.Texeira, S.C.M.Mitchell, E.P.Kelly, J.M.Cardin, J.C.Forsyth, V.T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3'A10N/A
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BA
Query on BA

Download SDF File 
Download CCD File 
A
BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
 Ligand Interaction
RKL
Query on RKL

Download SDF File 
Download CCD File 
A
Ru(tap)2(dppz) complex
C38 H22 N12 Ru
PIKVAZQLFXBUSD-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.127 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 54.376α = 90.00
b = 54.376β = 90.00
c = 28.995γ = 90.00
Software Package:
Software NamePurpose
SHELXEmodel building
SCALAdata scaling
MxCuBEdata collection
REFMACrefinement
XDSdata reduction
SHELXCDphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-16
    Type: Initial release
  • Version 1.1: 2015-04-29
    Type: Other
  • Version 1.2: 2017-11-08
    Type: Refinement description