3UWN

The 3-MBT repeat domain of L3MBTL1 in complex with a methyl-lysine mimic


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.231 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lethal(3)malignant brain tumor-like protein 1
A
331Homo sapiensMutation(s): 0 
Gene Names: L3MBTL1 (KIAA0681, L3MBT, L3MBTL)
Find proteins for Q9Y468 (Homo sapiens)
Go to Gene View: L3MBTL1
Go to UniProtKB:  Q9Y468
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UWN
Query on UWN

Download SDF File 
Download CCD File 
A
[2-(phenylamino)benzene-1,4-diyl]bis{[4-(pyrrolidin-1-yl)piperidin-1-yl]methanone}
C32 H43 N5 O2
PQOOIERVZAXHBP-UHFFFAOYSA-N
 Ligand Interaction
UNX
Query on UNX

Download SDF File 
Download CCD File 
A
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
UWNIC50: 2300 nM (100) BINDINGDB
UWNKd: 9400 nM (100) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.231 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 85.774α = 90.00
b = 94.530β = 90.00
c = 58.955γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2012-03-07
    Type: Initial release