3UM9

Crystal Structure of the Defluorinating L-2-Haloacid Dehalogenase Bpro0530


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.144 
  • R-Value Observed: 0.147 

wwPDB Validation   3D Report Full Report



Literature

Structural adaptations of L-2-haloacid dehalogenases that enable hydrolytic defluorination

Chan, P.W.Y.To, T.K.W.Petit, P.Tran, C.Waelti, M.Savchenko, A.Yakunin, A.F.Edwards, E.A.Pai, E.F.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Haloacid dehalogenase, type IIAB230Polaromonas sp. JS666Mutation(s): 0 
Gene Names: Bpro0530Bpro_0530
EC: 3.8.1.2
Find proteins for Q12G50 (Polaromonas sp. (strain JS666 / ATCC BAA-500))
Explore Q12G50 
Go to UniProtKB:  Q12G50
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
NI
Query on NI

Download CCD File 
A, B
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.144 
  • R-Value Observed: 0.147 
  • Space Group: P 65
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 96.64α = 90
b = 96.64β = 90
c = 92.03γ = 120
Software Package:
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-11-14
    Type: Initial release