3ULX | pdb_00003ulx

Crystal structural of the conserved domain of Rice Stress-responsive NAC1

• PDB DOI: https://doi.org/10.2210/pdb3ULX/pdb

• Classification: DNA BINDING PROTEIN
• Organism(s): Oryza sativa Japonica Group
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-11-11 Released: 2011-12-28 
• Deposition Author(s): Lou, Z.Y., Chen, Q.F., Wang, Q., Xiong, L.Z.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 
  0.276 (Depositor), 0.300 (DCC) 
• R-Value Work: 
  0.227 (Depositor), 0.260 (DCC) 
• R-Value Observed: 
  0.229 (Depositor) 

Starting Model: experimental

Literature

A structural view of the conserved domain of Rice Stress-responsive NAC1

Lou, Z.Y., Chen, Q.F., Wang, Q., Xiong, L.Z.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 20.03 kDa 
• Atom Count: 1,241 
• Modeled Residue Count: 146 
• Deposited Residue Count: 174 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Stress-induced transcription factor NAC1	A	174	Oryza sativa Japonica Group	Mutation(s): 0  Gene Names: snac1
UniProt
Find proteins for Q75HE5 (Oryza sativa subsp. japonica) Explore Q75HE5  Go to UniProtKB:  Q75HE5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free:  0.276 (Depositor), 0.300 (DCC) 
• R-Value Work:  0.227 (Depositor), 0.260 (DCC) 
• R-Value Observed: 0.229 (Depositor) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.972	α = 90
b = 45.972	β = 90
c = 176.494	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
PHASER	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-12-28 
Deposition Author(s): Lou, Z.Y., Chen, Q.F., Wang, Q., Xiong, L.Z.

Revision History  

• Version 1.0: 2011-12-28
  Type: Initial release
  
• Version 1.1: 2023-11-01
  Changes: Data collection, Database references, Refinement description