3UI6 | pdb_00003ui6

0.89 A resolution crystal structure of human Parvulin 14 in complex with oxidized DTT

• PDB DOI: https://doi.org/10.2210/pdb3UI6/pdb

• Classification: ISOMERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2011-11-04 Released: 2012-11-07 
• Deposition Author(s): Mueller, J.W., Link, N.M., Matena, A., Hoppstock, L., Rueppel, A., Bayer, P., Blankenfeldt, W.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 0.89 Å
• R-Value Free: 
  0.116 (Depositor), 0.123 (DCC) 
• R-Value Work: 
  0.103 (Depositor), 0.113 (DCC) 
• R-Value Observed: 
  0.103 (Depositor) 

Literature

0.89 A resolution crystal structure of human Parvulin 14 in complex with oxidized DTT

Mueller, J.W., Link, N.M., Matena, A., Hoppstock, L., Rueppel, A., Bayer, P., Blankenfeldt, W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 11.84 kDa 
• Atom Count: 1,077 
• Modeled Residue Count: 101 
• Deposited Residue Count: 101 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	A	101	Homo sapiens	Mutation(s): 0  Gene Names: PIN4, Q9Y237 EC: 5.2.1.8
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y237 (Homo sapiens) Explore Q9Y237  Go to UniProtKB:  Q9Y237
PHAROS:  Q9Y237 GTEx:  ENSG00000102309

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
D1D	G [auth A]	(4S,5S)-1,2-DITHIANE-4,5-DIOL C4 H8 O2 S2 YPGMOWHXEQDBBV-QWWZWVQMSA-N
SO4	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
NA	H [auth A], I [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 0.89 Å
• R-Value Free:  0.116 (Depositor), 0.123 (DCC) 
• R-Value Work:  0.103 (Depositor), 0.113 (DCC) 
• R-Value Observed: 0.103 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.24	α = 90
b = 47.02	β = 90
c = 51.85	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-11-07 
Deposition Author(s): Mueller, J.W., Link, N.M., Matena, A., Hoppstock, L., Rueppel, A., Bayer, P., Blankenfeldt, W.

Revision History  

• Version 1.0: 2012-11-07
  Type: Initial release
  
• Version 1.1: 2012-12-05
  Changes: Structure summary
• Version 1.2: 2018-01-31
  Changes: Database references
• Version 1.3: 2024-02-28
  Changes: Data collection, Database references, Derived calculations