3UGE | pdb_00003uge

Silver Metallated Pseudomonas aeruginosa Azurin at 1.70 A

• PDB DOI: https://doi.org/10.2210/pdb3UGE/pdb

• Classification: ELECTRON TRANSPORT
• Organism(s): Pseudomonas aeruginosa
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-11-02 Released: 2012-11-07 
• Deposition Author(s): Panzner, M.J., Billinovich, S.M., Parker, J.A., Bladholm, E., Berry, S.M., Ziegler, C.J., Leeper, T.C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.245 (Depositor), 0.253 (DCC) 
• R-Value Work: 
  0.203 (Depositor), 0.213 (DCC) 
• R-Value Observed: 
  0.206 (Depositor) 

Starting Model: experimental

Literature

Silver Metallation of Pseudomonas aeruginosa Azurin

Panzner, M.J., Billinovich, S.M., Parker, J.A., Bladholm, E., Berry, S.M., Ziegler, C.J., Leeper, T.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 56.28 kDa 
• Atom Count: 4,257 
• Modeled Residue Count: 512 
• Deposited Residue Count: 512 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Azurin	A, B, C, D	128	Pseudomonas aeruginosa	Mutation(s): 0  Gene Names: azu, PA4922
UniProt
Find proteins for P00282 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore P00282  Go to UniProtKB:  P00282

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
AG	E [auth A], F [auth B], G [auth C], H [auth D]	SILVER ION Ag FOIXSVOLVBLSDH-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.245 (Depositor), 0.253 (DCC) 
• R-Value Work:  0.203 (Depositor), 0.213 (DCC) 
• R-Value Observed: 0.206 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.746	α = 90
b = 97.815	β = 90
c = 110.029	γ = 90

Software Package:

Software Name	Purpose
APEX	data collection
REFMAC	refinement
SAINT	data reduction
APEX	data reduction
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-11-07 
Deposition Author(s): Panzner, M.J., Billinovich, S.M., Parker, J.A., Bladholm, E., Berry, S.M., Ziegler, C.J., Leeper, T.C.

Revision History  

• Version 1.0: 2012-11-07
  Type: Initial release
  
• Version 1.1: 2018-04-04
  Changes: Data collection
• Version 1.2: 2023-09-13
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.3: 2024-10-30
  Changes: Structure summary