3UF0

Crystal structure of a putative NAD(P) dependent gluconate 5-dehydrogenase from Beutenbergia cavernae(EFI target EFI-502044) with bound NADP (low occupancy)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of a putative NAD(P) dependent gluconate 5-dehydrogenase from Beutenbergia cavernae(EFI target EFI-502044) with bound NADP (low occupancy)

Vetting, M.W.Toro, R.Bhosle, R.Hillerich, B.Washington, E.Scott Glenn, A.Chowdhury, S.Evans, B.Hammonds, J.Zencheck, W.D.Imker, H.J.Gerlt, J.A.Almo, S.C.Enzyme Function Initiative (EFI)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Short-chain dehydrogenase/reductase SDR
A, B
273Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)Mutation(s): 0 
EC: 1.1.1.125
Find proteins for C5BY10 (Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432))
Go to UniProtKB:  C5BY10
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAP
Query on NAP

Download SDF File 
Download CCD File 
A, B
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.162 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 115.470α = 90.00
b = 115.470β = 90.00
c = 76.182γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
PHENIXphasing
SCALAdata scaling
PDB_EXTRACTdata extraction
PHENIXrefinement
CBASSdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2011-11-23
    Type: Initial release
  • Version 1.1: 2018-01-24
    Type: Database references