3UEB | pdb_00003ueb

Crystal structure of TON_0450 from Thermococcus onnurineus NA1

PDB DOI: https://doi.org/10.2210/pdb3UEB/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Thermococcus onnurineus NA1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-10-30 Released: 2012-10-10
Deposition Author(s): Kang, H.A., Ku, B., Doung, M., Oh, B.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.98 Å
R-Value Free:
0.253 (Depositor), 0.260 (DCC)
R-Value Work:
0.206 (Depositor), 0.220 (DCC)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of an Euryarchaeota-specific protein, TON_0450 from Thermococcus onnurineus NA1

Kang, H.A., Ku, B., Doung, M., Oh, B.H.

To be published.

Macromolecule Content

Total Structure Weight: 76.96 kDa
Atom Count: 5,166
Modeled Residue Count: 610
Deposited Residue Count: 660
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative uncharacterized protein	A, B, C, D, E A, B, C, D, E, F	110	Thermococcus onnurineus NA1	Mutation(s): 0 Gene Names: TON_0450
UniProt
Find proteins for B6YTZ3 (Thermococcus onnurineus (strain NA1)) Explore B6YTZ3 Go to UniProtKB: B6YTZ3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B6YTZ3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.98 Å
R-Value Free: 0.253 (Depositor), 0.260 (DCC)
R-Value Work: 0.206 (Depositor), 0.220 (DCC)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.059	α = 90
b = 108.059	β = 90
c = 127.603	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SOLVE	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2012-10-10

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-10-10
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.