3UDC

Crystal structure of a membrane protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.355 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.248 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure and molecular mechanism of an anion-selective mechanosensitive channel of small conductance

Zhang, X.Wang, J.Feng, Y.Ge, J.Li, W.Sun, W.Iscla, I.Yu, J.Blount, P.Li, Y.Yang, M.

(2012) Proc.Natl.Acad.Sci.USA 109: 18180-18185

  • DOI: 10.1073/pnas.1207977109
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Mechanosensitive (MS) channels are universal cellular membrane pores. Bacterial MS channels, as typified by MS channel of small conductance (MscS) from Escherichia coli (EcMscS), release osmolytes under hypoosmotic conditions. MS channels are known t ...

    Mechanosensitive (MS) channels are universal cellular membrane pores. Bacterial MS channels, as typified by MS channel of small conductance (MscS) from Escherichia coli (EcMscS), release osmolytes under hypoosmotic conditions. MS channels are known to be ion selective to different extents, but the underlying mechanism remains poorly understood. Here we identify an anion-selective MscS channel from Thermoanaerobacter tengcongensis (TtMscS). The structure of TtMscS closely resembles that of EcMscS, but it lacks the large cytoplasmic equatorial portals found in EcMscS. In contrast, the cytoplasmic pore formed by the C-terminal β-barrel of TtMscS is larger than that of EcMscS and has a strikingly different pattern of electrostatic surface potential. Swapping the β-barrel region between TtMscS and EcMscS partially switches the ion selectivity. Our study defines the role of the β-barrel in the ion selection of an anion-selective MscS channel and provides a structural basis for understanding the ion selectivity of MscS channels.


    Organizational Affiliation

    Key Laboratory for Protein Sciences of Ministry of Education, Tsinghua-Peking Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Small-conductance mechanosensitive channel, C-terminal peptide from Small-conductance mechanosensitive channel
A, B, C, D, E, F, G
285Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)Escherichia coli (strain K12)
This entity is chimeric
Mutation(s): 0 
Gene Names: mscS, mscS (yggB)
Find proteins for Q8R6L9 (Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4))
Go to UniProtKB:  Q8R6L9
Find proteins for P0C0S1 (Escherichia coli (strain K12))
Go to UniProtKB:  P0C0S1
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.355 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.248 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 96.046α = 90.00
b = 139.468β = 90.00
c = 224.113γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
HKL-2000data collection
PHENIXrefinement
AMoREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2011-10-28 
  • Released Date: 2012-10-31 
  • Deposition Author(s): Li, W., Ge, J., Yang, M.

Revision History 

  • Version 1.0: 2012-10-31
    Type: Initial release
  • Version 1.1: 2013-06-19
    Type: Database references
  • Version 1.2: 2017-08-16
    Type: Refinement description, Source and taxonomy