3U6X

Phage TP901-1 baseplate tripod


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.178 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism.

Veesler, D.Spinelli, S.Mahony, J.Lichiere, J.Blangy, S.Bricogne, G.Legrand, P.Ortiz-Lombardia, M.Campanacci, V.van Sinderen, D.Cambillau, C.

(2012) Proc.Natl.Acad.Sci.USA 109: 8954-8958

  • DOI: 10.1073/pnas.1200966109
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Phages of the Caudovirales order possess a tail that recognizes the host and ensures genome delivery upon infection. The X-ray structure of the approximately 1.8 MDa host adsorption device (baseplate) from the lactococcal phage TP901-1 shows that the ...

    Phages of the Caudovirales order possess a tail that recognizes the host and ensures genome delivery upon infection. The X-ray structure of the approximately 1.8 MDa host adsorption device (baseplate) from the lactococcal phage TP901-1 shows that the receptor-binding proteins are pointing in the direction of the host, suggesting that this organelle is in a conformation ready for host adhesion. This result is in marked contrast with the lactococcal phage p2 situation, whose baseplate is known to undergo huge conformational changes in the presence of Ca(2+) to reach its active state. In vivo infection experiments confirmed these structural observations by demonstrating that Ca(2+) ions are required for host adhesion among p2-like phages (936-species) but have no influence on TP901-1-like phages (P335-species). These data suggest that these two families rely on diverse adhesion strategies which may lead to different signaling for genome release.


    Organizational Affiliation

    Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, Campus de Luminy, Case 932, 13288 Marseille Cedex 09, France. david.veesler@afmb.univ-mrs.fr




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
BPP
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
164Lactococcus phage TP901-1Mutation(s): 0 
Gene Names: bpp
Find proteins for Q9G096 (Lactococcus phage TP901-1)
Go to UniProtKB:  Q9G096
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ORF48
S, T, U, X, Y, Z
105Lactococcus phage TP901-1Mutation(s): 0 
Find proteins for Q9AZ56 (Lactococcus phage TP901-1)
Go to UniProtKB:  Q9AZ56
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BR
Query on BR

Download SDF File 
Download CCD File 
D, E, G, H, I, K, N, O, P, Q, S, T, U, X, Y, Z
BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.178 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 149.960α = 90.00
b = 237.420β = 115.67
c = 152.210γ = 90.00
Software Package:
Software NamePurpose
ADSCdata collection
XDSdata reduction
BUSTERrefinement
XSCALEdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-07-04
    Type: Initial release
  • Version 1.1: 2012-07-11
    Type: Database references