Biological Assembly 1  

 3D View: Structure | 1D-3D View | Electron Density | Validation Report | Ligand Interaction

Global Symmetry: Dihedral - D2  (3D View)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 136.87 kDa 
• Atom Count: 9710 
• Modelled Residue Count: 1275 
• Deposited Residue Count: 1276 
• Unique protein chains: 1

3U39

Crystal Structure of the apo Bacillus Stearothermophilus phosphofructokinase

• PDB DOI: 10.2210/pdb3U39/pdb

• Classification: TRANSFERASE
• Organism(s): Geobacillus stearothermophilus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2011-10-05 Released: 2012-03-28 
• Deposition Author(s): Mosser, R., Reddy, M.C.M., Bruning, J.B., Sacchettini, J.C., Reinhart, G.D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.79 Å
• R-Value Free: 0.260 
• R-Value Work: 0.199 
• R-Value Observed: 0.202 

Literature

Structure of the apo form of Bacillus stearothermophilus phosphofructokinase.

Mosser, R., Reddy, M.C., Bruning, J.B., Sacchettini, J.C., Reinhart, G.D.

(2012) Biochemistry 51: 769-775

• PubMed: 22212099 
• DOI: 10.1021/bi201548p
• Primary Citation of Related Structures:  
  3U39


• PubMed Abstract: 
  

The crystal structure of the unliganded form of Bacillus stearothermophilus phosphofructokinase (BsPFK) was determined using molecular replacement to 2.8 Å resolution (Protein Data Bank entry 3U39 ). The apo BsPFK structure serves as the basis for the interpretation of any structural changes seen in the binary or ternary complexes. When the apo BsPFK structure is compared with the previously published liganded structures of BsPFK, the structural impact that the binding of the ligands produces is revealed. This comparison shows that the apo form of BsPFK resembles the substrate-bound form of BsPFK, a finding that differs from previous predictions.

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Organizational Affiliation: 

Department of Biochemistry and Biophysics, Texas A&M University and Texas AgriLife Research, College Station, Texas 77843-2128, United States.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
6-phosphofructokinase	A, B, C, D	319	Geobacillus stearothermophilus	Mutation(s): 0  Gene Names: pfkA, pfk EC: 2.7.1.11
UniProt
Find proteins for P00512 (Geobacillus stearothermophilus) Explore P00512  Go to UniProtKB:  P00512

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CA	E [auth A], F [auth A], G [auth B], H [auth C], I [auth C]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.79 Å
• R-Value Free: 0.260 
• R-Value Work: 0.199 
• R-Value Observed: 0.202 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 201.909	α = 90
b = 113.383	β = 104.03
c = 76.627	γ = 90

Software Package:

Software Name	Purpose
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2011-10-05 
• Released Date: 2012-03-28 
Deposition Author(s): Mosser, R., Reddy, M.C.M., Bruning, J.B., Sacchettini, J.C., Reinhart, G.D.

Revision History  

• Version 1.0: 2012-03-28
  Type: Initial release
  
• Version 1.1: 2016-12-28
  Changes: Structure summary