3U24

The structure of a putative lipoprotein of unknown function from Shewanella oneidensis.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The structure of a putative lipoprotein of unknown function from Shewanella oneidensis.

Cuff, M.E.Hatzos-Skintges, C.Bearden, J.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
putative Lipoprotein
A
572Shewanella oneidensis (strain MR-1)Mutation(s): 0 
Find proteins for Q8EE20 (Shewanella oneidensis (strain MR-1))
Go to UniProtKB:  Q8EE20
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

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A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

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Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
IMD
Query on IMD

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A
IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
 Ligand Interaction
ACY
Query on ACY

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A
ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.162 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 96.427α = 90.00
b = 96.427β = 90.00
c = 133.947γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
HKL-3000data scaling
SHELXEmodel building
HKL-3000phasing
DMphasing
SBC-Collectdata collection
HKL-3000data reduction
REFMACrefinement
MLPHAREphasing
SOLVEphasing
ARP/wARPmodel building
CCP4phasing
Omodel building
RESOLVEphasing
SCALEPACKdata scaling
DENZOdata reduction
SHELXDphasing
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-05-09
    Type: Initial release
  • Version 1.1: 2017-11-08
    Type: Refinement description