3U1U

Crystal structure of RNA polymerase-associated protein RTF1 homolog Plus-3 domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of RNA polymerase-associated protein RTF1 homolog Plus-3 domain

Guo, Y.Tempel, W.Bian, C.Wernimont, A.K.Bountra, C.Weigelt, J.Arrowsmith, C.H.Edwards, A.M.Min, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RNA polymerase-associated protein RTF1 homolog
A, B
137Homo sapiensMutation(s): 0 
Gene Names: RTF1 (KIAA0252)
Find proteins for Q92541 (Homo sapiens)
Go to Gene View: RTF1
Go to UniProtKB:  Q92541
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

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Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
UNX
Query on UNX

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Download CCD File 
A, B
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.202 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 47.479α = 90.00
b = 50.369β = 103.37
c = 69.776γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
JDirectordata collection
REFMACrefinement
XDSdata reduction
ARP/wARPmodel building
SHELXphasing
SCALAdata scaling
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-04-04
    Type: Initial release
  • Version 1.1: 2017-11-08
    Type: Refinement description