Macromolecule Content

Total Structure Weight: 123122.33
Atom Count: 6860
Residue Count: 1088
Unique protein chains: 1

3U17

Structure of BasE N-terminal domain from Acinetobacter baumannii bound to 6-(p-benzoyl)phenyl-1-(pyridin-4-ylmethyl)-1H-pyrazolo[3,4-b]pyridine-4-carboxylic acid

DOI: 10.2210/pdb3U17/pdb

Classification: LIGASE
Expression System: Escherichia coli BL21(DE3)

Deposited: 2011-09-29 Released: 2012-10-03
Deposition Author(s): Gulick, A.M., Drake, E.J., Aldrich, C.C., Neres, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.1 Å
R-Value Free: 0.221
R-Value Work: 0.189

wwPDB Validation3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure-Activity Relationship of BasE

Neres, J., Drake, E., Gulick, A.M., Aldrich, C.C.

To be published.

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Peptide arylation enzyme	A, B	544	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
H90 Query on H90 Download SDF File Download CCD File	A, B	6-(4-benzoylphenyl)-1-(pyridin-4-ylmethyl)-1H-pyrazolo[3,4-b]pyridine-4-carboxylic acid C₂₆ H₁₈ N₄ O₃ PTCVSDDJAQNAKH-UHFFFAOYSA-N		Ligand Interaction
CA Query on CA Download SDF File Download CCD File	A, B	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Ligand Interaction
MRD Query on MRD Download SDF File Download CCD File	B	(4R)-2-METHYLPENTANE-2,4-DIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-RXMQYKEDSA-N		Ligand Interaction
MPD Query on MPD Download SDF File Download CCD File	A	(4S)-2-METHYL-2,4-PENTANEDIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-YFKPBYRVSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.1 Å
R-Value Free: 0.221
R-Value Work: 0.189
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 65.368	α = 90.00
b = 144.232	β = 90.00
c = 148.735	γ = 90.00

Software Package:

Software Name	Purpose
PHENIX	refinement
REFMAC	refinement
HKL-2000	data scaling
REFMAC	phasing
Blu-Ice	data collection
HKL-2000	data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 2011-09-29
Released Date: 2012-10-03
Deposition Author(s): Gulick, A.M., Drake, E.J., Aldrich, C.C., Neres, J.

Revision History

Version 1.0: 2012-10-03
Type: Initial release

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.