3U04

Crystal structure of peptide deformylase from ehrlichia chaffeensis in complex with actinonin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.170 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of peptide deformylase from ehrlichia chaffeensis in complex with actinonin

Seattle Structural Genomics Center for Infectious Disease (SSGCID)Abendroth, J.Clifton, M.C.Edwards, T.E.Staker, B.L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peptide deformylase 1
A
190Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas)Mutation(s): 0 
Gene Names: def
EC: 3.5.1.88
Find proteins for Q2GI30 (Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas))
Go to UniProtKB:  Q2GI30
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
BB2
Query on BB2

Download SDF File 
Download CCD File 
A
ACTINONIN
2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2-HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL-PROPYL]-AMIDE
C19 H35 N3 O5
XJLATMLVMSFZBN-VYDXJSESSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 83.890α = 90.00
b = 33.020β = 91.17
c = 68.140γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-10-12
    Type: Initial release
  • Version 1.1: 2018-01-24
    Type: Database references