3TZ5

Crystal structure of branched-chain alpha-ketoacid dehydrogenase kinase/phenylbutyrate complex with ADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structures of branched-chain alpha-ketoacid dehydrogenase kinase-inhibitor complexes

Tso, S.C.Chuang, J.L.Gui, W.J.Wynn, R.M.Li, J.Chuang, D.T.

(2013) Proc.Natl.Acad.Sci.USA --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial
A
418Rattus norvegicusGene Names: Bckdk
EC: 2.7.11.4
Find proteins for Q00972 (Rattus norvegicus)
Go to UniProtKB:  Q00972
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

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Download CCD File 
A
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
ADP
Query on ADP

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Download CCD File 
A
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
CLT
Query on CLT

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Download CCD File 
A
4-PHENYL-BUTANOIC ACID
GAMMA-PHENYL-BUTYRIC ACID
C10 H12 O2
OBKXEAXTFZPCHS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.204 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 127.703α = 90.00
b = 127.703β = 90.00
c = 73.871γ = 90.00
Software Package:
Software NamePurpose
PHENIXmodel building
PHENIXphasing
HKL-2000data scaling
HKL-2000data collection
PHENIXrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-10-03
    Type: Initial release
  • Version 1.1: 2013-05-29
    Type: Database references