3TYW | pdb_00003tyw

Crystal Structure of CYP105N1 from Streptomyces coelicolor A3(2)

• PDB DOI: https://doi.org/10.2210/pdb3TYW/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Streptomyces coelicolor
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-09-26 Released: 2012-07-11 
• Deposition Author(s): Zhao, B., Waterman, M.R.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 
  0.300 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.282 (Depositor), 0.250 (DCC) 
• R-Value Observed: 
  0.282 (Depositor) 

Literature

Crystal Structure of CYP105N1 from Streptomyces coelicolor A3(2)

Zhao, B., Waterman, M.R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Biological Assembly 5  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 5 generated by PISA (software)

Biological Assembly 6  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 6 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 186.41 kDa 
• Atom Count: 12,633 
• Modeled Residue Count: 1,591 
• Deposited Residue Count: 1,668 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative cytochrome P450	A, B, C, D	417	Streptomyces coelicolor	Mutation(s): 0  Gene Names: SCO7686 EC: 1.14.19.69
UniProt
Find proteins for Q9EWP1 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)) Explore Q9EWP1  Go to UniProtKB:  Q9EWP1

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
HEM	E [auth A], F [auth B], G [auth C], H [auth D]	PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free:  0.300 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.282 (Depositor), 0.250 (DCC) 
• R-Value Observed: 0.282 (Depositor) 

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 134.537	α = 90
b = 134.537	β = 90
c = 230.58	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-07-11 
Deposition Author(s): Zhao, B., Waterman, M.R.

Revision History  

• Version 1.0: 2012-07-11
  Type: Initial release
  
• Version 1.1: 2017-11-08
  Changes: Refinement description
• Version 1.2: 2024-02-28
  Changes: Data collection, Database references, Derived calculations