3TV0 | pdb_00003tv0

Structure of dynactin p27 subunit

PDB DOI: https://doi.org/10.2210/pdb3TV0/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-09-19 Released: 2012-10-03
Deposition Author(s): Derewenda, Z.S., Derewenda, U., Kowalska, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.258 (Depositor), 0.245 (DCC)
R-Value Work:
0.214 (Depositor), 0.205 (DCC)
R-Value Observed:
0.216 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Dynactin targets Polo-like kinase 1 to kinetochores

Derewenda, Z.S., Derewenda, U., Kowalska, A., Zheng, M.

To be published.

Macromolecule Content

Total Structure Weight: 42.17 kDa
Atom Count: 2,219
Modeled Residue Count: 284
Deposited Residue Count: 388
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dynactin subunit 6	A, B	194	Homo sapiens	Mutation(s): 0 Gene Names: DCTN6, WS3
UniProt & NIH Common Fund Data Resources
Find proteins for O00399 (Homo sapiens) Explore O00399 Go to UniProtKB: O00399
PHAROS: O00399 GTEx: ENSG00000104671
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O00399
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.258 (Depositor), 0.245 (DCC)
R-Value Work: 0.214 (Depositor), 0.205 (DCC)
R-Value Observed: 0.216 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.96	α = 90
b = 57.14	β = 108.5
c = 80.19	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
BALBES	phasing
PHENIX	refinement
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2012-10-03

Deposition Author(s):

Derewenda, Z.S.

Revision History (Full details and data files)

Version 1.0: 2012-10-03
Type: Initial release
Version 1.1: 2024-11-20
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.