3TU1

Exhaustive Fluorine Scanning towards Potent p53-MDM2 Antagonist


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.603 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.205 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Exhaustive Fluorine Scanning toward Potent p53-Mdm2 Antagonists.

Huang, Y.Wolf, S.Koes, D.Popowicz, G.M.Camacho, C.J.Holak, T.A.Domling, A.

(2012) Chemmedchem 7: 49-52


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
E3 ubiquitin-protein ligase Mdm2
A
108Homo sapiensMutation(s): 0 
Gene Names: MDM2
EC: 2.3.2.27
Find proteins for Q00987 (Homo sapiens)
Go to Gene View: MDM2
Go to UniProtKB:  Q00987
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
07G
Query on 07G

Download SDF File 
Download CCD File 
A
2-(tert-butylamino)-1-(2-carboxy-6-chloro-1H-indol-3-yl)-1-[(3,4-difluorobenzyl)(formyl)amino]-2-oxoethylium
C23 H21 Cl F2 N3 O4
SKZKZBKXJCIIQD-UHFFFAOYSA-O
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
07GKi: 250 nM BINDINGMOAD
07GKi: 250 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.603 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.205 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 49.950α = 90.00
b = 59.250β = 90.00
c = 82.950γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XFITdata reduction
MAR345data collection
XSCALEdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-11-02
    Type: Initial release
  • Version 1.1: 2012-01-18
    Type: Database references
  • Version 1.2: 2017-11-08
    Type: Refinement description