3TSO

Structure of the cancer associated Rab25 protein in complex with FIP2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.199 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of the cancer associated Rab25 protein in complex with FIP2

Oda, S.Lall, P.Y.McCaffrey, M.W.Khan, A.R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ras-related protein Rab-25
A, B
178Homo sapiensMutation(s): 0 
Gene Names: RAB25 (CATX8)
Find proteins for P57735 (Homo sapiens)
Go to Gene View: RAB25
Go to UniProtKB:  P57735
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Rab11 family-interacting protein 2
C, D
75Homo sapiensMutation(s): 0 
Gene Names: RAB11FIP2 (KIAA0941)
Find proteins for Q7L804 (Homo sapiens)
Go to Gene View: RAB11FIP2
Go to UniProtKB:  Q7L804
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

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Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
GNP
Query on GNP

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Download CCD File 
A, B
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.199 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 43.310α = 113.25
b = 64.210β = 107.24
c = 65.940γ = 99.46
Software Package:
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
ADSCdata collection
MOSFLMdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-09-19
    Type: Initial release