3TS6

Crystal structure of M-PMV DUTPASE relaxed end-product (dUMP) complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.167 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural Snapshots of Enzyme-Catalysed Phosphate Ester Hydrolysis Directly Visualize in-Line Attack and Inversion

Barabas, O.Nemeth, V.Bodor, A.Perczel, A.Rosta, E.Kele, Z.Zagyva, I.Szabadka, Z.Grolmusz, V.I.Wilmanns, M.Vertessy, B.G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE
A
152Mason-Pfizer monkey virusMutation(s): 1 
Gene Names: gag-pro
Find proteins for P07570 (Mason-Pfizer monkey virus)
Go to UniProtKB:  P07570
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UMP
Query on UMP

Download SDF File 
Download CCD File 
A
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
DUMP
C9 H13 N2 O8 P
JSRLJPSBLDHEIO-SHYZEUOFSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CSO
Query on CSO
A
L-PEPTIDE LINKINGC3 H7 N O3 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.167 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 60.682α = 90.00
b = 60.682β = 90.00
c = 63.544γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
XSCALEdata scaling
REFMACphasing
MAR345data collection
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-10-12
    Type: Initial release
  • Version 1.1: 2017-11-08
    Type: Refinement description