3TOX

Crystal structure of a short chain dehydrogenase in complex with NAD(P) from Sinorhizobium meliloti 1021


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.203 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of a short chain dehydrogenase in complex with NAD(P) from Sinorhizobium meliloti 1021

Agarwal, R.Almo, S.C.Swaminathan, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Short chain dehydrogenase
A,
B,
C,
D,
E,
A,
B,
C,
D,
E,
F,
G,
H [auth I]
280Sinorhizobium meliloti 1021Mutation(s): 0 
Gene Names: R00292SMc00372
UniProt
Find proteins for Q92SS3 (Rhizobium meliloti (strain 1021))
Explore Q92SS3 
Go to UniProtKB:  Q92SS3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92SS3
Protein Feature View
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.203 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 122.975α = 90
b = 122.942β = 90.03
c = 139.818γ = 90
Software Package:
Software NamePurpose
CBASSdata collection
CCP4model building
PHASERphasing
ARP/wARPmodel building
Cootmodel building
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
CCP4phasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2011-09-21
    Type: Initial release
  • Version 1.1: 2017-11-08
    Changes: Refinement description