3TOJ

Structure of the SPRY domain of human Ash2L

PDB DOI: https://doi.org/10.2210/pdb3TOJ/pdb

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-09-05 Released: 2012-01-25
Deposition Author(s): Chen, Y., Cao, F., Wan, B., Dou, Y., Lei, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.07 Å
R-Value Free: 0.206
R-Value Work: 0.176
R-Value Observed: 0.179

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Structure of the SPRY domain of human Ash2L and its interactions with RbBP5 and DPY30.

Chen, Y., Cao, F., Wan, B., Dou, Y., Lei, M.

(2012) Cell Res 22: 598-602

PubMed: 22231628 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/cr.2012.9
Primary Citation of Related Structures:
3TOJ

Macromolecule Content

Total Structure Weight: 47.87 kDa
Atom Count: 3,403
Modelled Residue Count: 393
Deposited Residue Count: 426
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Set1/Ash2 histone methyltransferase complex subunit ASH2	A, B	213	Homo sapiens	Mutation(s): 0 Gene Names: ASH2L, ASH2L1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UBL3 (Homo sapiens) Explore Q9UBL3 Go to UniProtKB: Q9UBL3
PHAROS: Q9UBL3 GTEx: ENSG00000129691
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9UBL3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.07 Å
R-Value Free: 0.206
R-Value Work: 0.176
R-Value Observed: 0.179
Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 115.289	α = 90
b = 115.289	β = 90
c = 105.78	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
SHARP	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2012-01-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-01-25
Type: Initial release
Version 1.1: 2012-07-18
Changes: Database references
Version 1.2: 2017-08-23
Changes: Refinement description, Source and taxonomy
Version 1.3: 2024-11-06
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.