3TMH

Crystal structure of dual-specific A-kinase anchoring protein 2 in complex with cAMP-dependent protein kinase A type II alpha and PDZK1

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.80 Å
  • R-Value Free: 0.328 
  • R-Value Work: 0.268 
  • R-Value Observed: 0.273 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Differential mode of D-AKAP2 to PKA isoforms: Insights from D-AKAP2 PKA RII PDZK1 ternary complex structure

Sarma, G.N., Phan, R.H., Sankaran, B., Taylor, S.S.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Na(+)/H(+) exchange regulatory cofactor NHE-RF3
A, E, I
87Homo sapiensMutation(s): 0 
Gene Names: PDZK1, CAP70, NHERF3, PDZD1
UniProt & NIH Common Fund Data Resources
Find proteins for Q5T2W1 (Homo sapiens)
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Go to UniProtKB:  Q5T2W1
PHAROS:  Q5T2W1
GTEx:  ENSG00000174827 
Entity Groups  
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UniProt GroupQ5T2W1
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
cAMP-dependent protein kinase type II-alpha regulatory subunit
B, C, F, G
48Rattus norvegicusMutation(s): 0 
Gene Names: Prkar2a
UniProt
Find proteins for P12368 (Rattus norvegicus)
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Go to UniProtKB:  P12368
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UniProt GroupP12368
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
A-kinase anchor protein 10, mitochondrialD,
H,
J [auth L]		45Homo sapiensMutation(s): 0 
Gene Names: AKAP10
UniProt & NIH Common Fund Data Resources
Find proteins for O43572 (Homo sapiens)
Explore O43572 
Go to UniProtKB:  O43572
PHAROS:  O43572
GTEx:  ENSG00000108599 
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UniProt GroupO43572
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.80 Å
  • R-Value Free: 0.328 
  • R-Value Work: 0.268 
  • R-Value Observed: 0.273 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 121.472α = 90
b = 121.472β = 90
c = 88.282γ = 120
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-09-05
    Type: Initial release
  • Version 1.1: 2024-02-28
    Changes: Data collection, Database references