3TEB

endonuclease/exonuclease/phosphatase family protein from Leptotrichia buccalis C-1013-b


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of endonuclease/exonuclease/phosphatase family protein from Leptotrichia buccalis C-1013-b

Chang, C.Bigelow, L.Muniez, I.Bearden, J.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Endonuclease/exonuclease/phosphatase
A, B
266Leptotrichia buccalis (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249 / C-1013-b)Mutation(s): 0 
Find proteins for C7NB70 (Leptotrichia buccalis (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249 / C-1013-b))
Go to UniProtKB:  C7NB70
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.176 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 206.915α = 90.00
b = 206.915β = 90.00
c = 89.271γ = 120.00
Software Package:
Software NamePurpose
HKL-3000phasing
MLPHAREphasing
CNSphasing
ARP/wARPmodel building
Cootmodel building
PDB_EXTRACTdata extraction
HKL-3000data scaling
HKL-3000data reduction
RESOLVEphasing
REFMACrefinement
SBC-Collectdata collection
DMphasing
SHELXDEphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-08-31
    Type: Initial release