3TCX

Structure of Engineered Single Domain ICAM-1 D1 with High-Affinity aL Integrin I Domain of Native C-Terminal Helix Conformation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.218 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of Engineered Single Domain ICAM-1 D1 with High-Affinity L Integrin I Domain of Native C-Terminal Helix Conformation

Kang, S.Kim, C.U.Gu, X.Owens, R.M.van Rijn, S.J.Boonyaleepun, V.Mao, Y.Springer, T.A.Jin, M.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Intercellular adhesion molecule 1
A, C, E, G, I, K, M, O, Q, S, U, W, Y, a
85Homo sapiensMutation(s): 7 
Gene Names: ICAM1
Find proteins for P05362 (Homo sapiens)
Go to Gene View: ICAM1
Go to UniProtKB:  P05362
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Integrin alpha-L
B, D, F, H, J, L, N, P, R, T, V, X, Z, b
180Homo sapiensMutation(s): 1 
Gene Names: ITGAL (CD11A)
Find proteins for P20701 (Homo sapiens)
Go to Gene View: ITGAL
Go to UniProtKB:  P20701
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
B, b, D, F, H, J, L, N, P, R, T, V, X, Z
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.218 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 104.041α = 90.00
b = 166.334β = 90.00
c = 299.372γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
HKL-2000data scaling
HKL-2000data reduction
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-08-31
    Type: Initial release
  • Version 1.1: 2011-09-07
    Type: Other
  • Version 1.2: 2014-11-12
    Type: Structure summary