3TBY

CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX WITH THE LCMV-DERIVED GP33 ALTERED PEPTIDE ligand (V3P, Y4F)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.315 
  • R-Value Work: 0.284 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Conversion of a T cell viral antagonist into an agonist through higher stabilization and conserved molecular mimicry: Implications for TCR recognition

Duru, A.D.Allerbring, E.B.Uchtenhagen, H.Mazumdar, P.A.Badia-Martinez, D.Madhurantakam, C.Sandalova, T.Nygren, P.Achour, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
H-2 class I histocompatibility antigen, D-B alpha chain
A, D, G, J
276Mus musculusMutation(s): 0 
Gene Names: H2-D1
Find proteins for P01899 (Mus musculus)
Go to UniProtKB:  P01899
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B, E, H, K
99Mus musculusMutation(s): 0 
Gene Names: B2m
Find proteins for P01887 (Mus musculus)
Go to UniProtKB:  P01887
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
GLYCOPROTEIN GPC
C, F, I, L
9Lymphocytic choriomeningitis virus (strain WE)Mutation(s): 3 
Gene Names: GPC (GP-C)
Find proteins for P07399 (Lymphocytic choriomeningitis virus (strain WE))
Go to UniProtKB:  P07399
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.315 
  • R-Value Work: 0.284 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 92.820α = 90.00
b = 124.270β = 103.29
c = 99.650γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
MxCuBEdata collection
MOLREPphasing
MOSFLMdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-08-08
    Type: Initial release