Crystal structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Salmonella typhimurium bound to cytidine
Seattle Structural Genomics Center for Infectious Disease (SSGCID), Staker, B.L., Edwards, T.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 162 | Salmonella enterica subsp. enterica serovar Typhimurium | Mutation(s): 0  Gene Names: ispF, STM2929 EC: 4.6.1.12 | ||
UniProt | |||||
Find proteins for Q8ZMF7 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Go to UniProtKB:  Q8ZMF7 | |||||
Sequence AnnotationsExpand | |||||
|
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CTN Query on CTN | DA [auth D] IA [auth E] J [auth A] NA [auth F] Q [auth B] | 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE C9 H13 N3 O5 UHDGCWIWMRVCDJ-XVFCMESISA-N | |||
POP Query on POP | JA [auth E], K [auth A] | PYROPHOSPHATE 2- H2 O7 P2 XPPKVPWEQAFLFU-UHFFFAOYSA-L | |||
ZN Query on ZN | AA [auth D] G [auth A] GA [auth E] LA [auth F] O [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | EA [auth D] FA [auth D] KA [auth E] L [auth A] M [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MG Query on MG | BA [auth D] CA [auth D] H [auth A] HA [auth E] I [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 200.013 | α = 90 |
b = 147.657 | β = 106.38 |
c = 56.919 | γ = 90 |
Software Name | Purpose |
---|---|
MxDC | data collection |
PHASER | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |