3T6O

The Structure of an Anti-sigma-factor antagonist (STAS) domain protein from Planctomyces limnophilus.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The Structure of an Anti-sigma-factor antagonist (STAS) domain protein from Planctomyces limnophilus.

Cuff, M.E.Moser, C.Hatzos-Skintges, C.Bearden, J.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Sulfate transporter/antisigma-factor antagonist STAS
A, B, C
121Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)Mutation(s): 0 
Find proteins for D5SP81 (Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290))
Go to UniProtKB:  D5SP81
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.174 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 73.038α = 90.00
b = 92.453β = 90.00
c = 142.753γ = 90.00
Software Package:
Software NamePurpose
ARP/wARPmodel building
SHELXDphasing
DMphasing
MLPHAREphasing
DENZOdata reduction
Cootmodel building
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
SOLVEphasing
SHELXEmodel building
REFMACrefinement
HKL-3000data scaling
RESOLVEphasing
SBC-Collectdata collection
HKL-3000phasing
Omodel building
HKL-3000data reduction
CCP4phasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-09-07
    Type: Initial release
  • Version 1.1: 2017-11-08
    Type: Refinement description