3T6G | pdb_00003t6g

Structure of the complex between NSP3 (SHEP1) and p130Cas


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 
    0.266 (Depositor), 0.267 (DCC) 
  • R-Value Work: 
    0.197 (Depositor), 0.199 (DCC) 
  • R-Value Observed: 
    0.200 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 3T6G

This is version 1.2 of the entry. See complete history

Literature

NSP-Cas protein structures reveal a promiscuous interaction module in cell signaling.

Mace, P.D.Wallez, Y.Dobaczewska, M.K.Lee, J.J.Robinson, H.Pasquale, E.B.Riedl, S.J.

(2011) Nat Struct Mol Biol 18: 1381-1387

  • DOI: https://doi.org/10.1038/nsmb.2152
  • Primary Citation Related Structures: 
    3T6A, 3T6G

  • PubMed Abstract: 

    Members of the novel SH2-containing protein (NSP) and Crk-associated substrate (Cas) protein families form multidomain signaling platforms that mediate cell migration and invasion through a collection of distinct signaling motifs. Members of each family interact via their respective C-terminal domains, but the mechanism of this association has remained enigmatic. Here we present the crystal structures of the C-terminal domain from the NSP protein BCAR3 and the complex of NSP3 with p130Cas. BCAR3 adopts the Cdc25-homology fold of Ras GTPase exchange factors, but it has a 'closed' conformation incapable of enzymatic activity. The structure of the NSP3-p130Cas complex reveals that this closed conformation is instrumental for interaction of NSP proteins with a focal adhesion-targeting domain present in Cas proteins. This enzyme-to-adaptor conversion enables high-affinity, yet promiscuous, interactions between NSP and Cas proteins and represents an unprecedented mechanistic paradigm linking cellular signaling networks.


  • Organizational Affiliation
    • Program of Apoptosis and Cell Death Research, Cancer Center, Sanford-Burnham Medical Research Institute, La Jolla, California, USA.

Macromolecule Content 

  • Total Structure Weight: 125.16 kDa 
  • Atom Count: 6,595 
  • Modeled Residue Count: 837 
  • Deposited Residue Count: 1,120 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
SH2 domain-containing protein 3C
A, C
331Homo sapiensMutation(s): 2 
Gene Names: SH2D3CNSP3UNQ272/PRO309/PRO34088
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N5H7 (Homo sapiens)
Explore Q8N5H7 
Go to UniProtKB:  Q8N5H7
PHAROS:  Q8N5H7
GTEx:  ENSG00000095370 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N5H7
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Breast cancer anti-estrogen resistance protein 1
B, D
229Homo sapiensMutation(s): 0 
Gene Names: BCAR1CASCASS1CRKAS
UniProt & NIH Common Fund Data Resources
Find proteins for P56945 (Homo sapiens)
Explore P56945 
Go to UniProtKB:  P56945
PHAROS:  P56945
GTEx:  ENSG00000050820 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP56945
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ACT

Query on ACT



Download:Ideal Coordinates CCD File
E [auth C]ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free:  0.266 (Depositor), 0.267 (DCC) 
  • R-Value Work:  0.197 (Depositor), 0.199 (DCC) 
  • R-Value Observed: 0.200 (Depositor) 
Space Group: I 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 171.883α = 90
b = 171.883β = 90
c = 78.27γ = 90
Software Package:
Software NamePurpose
SHARPphasing
PHENIXrefinement
XDSdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-11-23
    Type: Initial release
  • Version 1.1: 2011-12-28
    Changes: Database references
  • Version 1.2: 2024-02-28
    Changes: Data collection, Database references, Derived calculations