3T4R

Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.294 
  • R-Value Work: 0.226 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of the C-terminal domain of lettuce necrotic yellows virus phosphoprotein.

Martinez, N.Ribeiro, E.A.Leyrat, C.Tarbouriech, N.Ruigrok, R.W.Jamin, M.

(2013) J.Virol. 87: 9569-9578

  • DOI: 10.1128/JVI.00999-13

  • PubMed Abstract: 
  • Lettuce necrotic yellows virus (LNYV) is a prototype of the plant-adapted cytorhabdoviruses. Through a meta-prediction of disorder, we localized a folded C-terminal domain in the amino acid sequence of its phosphoprotein. This domain consists of an a ...

    Lettuce necrotic yellows virus (LNYV) is a prototype of the plant-adapted cytorhabdoviruses. Through a meta-prediction of disorder, we localized a folded C-terminal domain in the amino acid sequence of its phosphoprotein. This domain consists of an autonomous folding unit that is monomeric in solution. Its structure, solved by X-ray crystallography, reveals a lollipop-shaped structure comprising five helices. The structure is different from that of the corresponding domains of other Rhabdoviridae, Filoviridae, and Paramyxovirinae; only the overall topology of the polypeptide chain seems to be conserved, suggesting that this domain evolved under weak selective pressure and varied in size by the acquisition or loss of functional modules.


    Organizational Affiliation

    Université Grenoble Alpes, UVHCI, Grenoble, France.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phosphoprotein
A
81Lettuce necrotic yellows virus (isolate 318)Mutation(s): 0 
Gene Names: P
Find proteins for Q9E7N7 (Lettuce necrotic yellows virus (isolate 318))
Go to UniProtKB:  Q9E7N7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.294 
  • R-Value Work: 0.226 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 43.280α = 90.00
b = 43.280β = 90.00
c = 89.380γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
SHELXDphasing
DNAdata collection
REFMACrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-30
    Type: Initial release
  • Version 1.1: 2014-03-26
    Type: Database references