Download MendeleyCrystal structure of Tryptophanyl-tRNA synthetase from Vibrio cholerae with an endogenous tryptophan
Cooper, D.R., Kudritska, M., Chruszcz, M., Grabowski, M., Anderson, W.F., Minor, W.To be published.
3SZ3
Crystal structure of Tryptophanyl-tRNA synthetase from Vibrio cholerae with an endogenous tryptophan
- DOI: 10.2210/pdb3SZ3/pdb
- Classification: LIGASE
- Organism(s): Vibrio cholerae O1 biovar El Tor str. N16961
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-07-18 Released: 2011-09-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.179
- R-Value Work: 0.160
- R-Value Observed: 0.161
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tryptophanyl-tRNA synthetase | A | 341 | Vibrio cholerae O1 biovar El Tor str. N16961 | Mutation(s): 0 Gene Names: trpS, VC_2623 EC: 6.1.1.2 |  |
Find proteins for Q9KNV7 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KNV7 Go to UniProtKB: Q9KNV7 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TRP Query on TRP | A | TRYPTOPHAN C11 H12 N2 O2 QIVBCDIJIAJPQS-VIFPVBQESA-N |  | Ligand Interaction | |
| GOL Query on GOL | A | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.179
- R-Value Work: 0.160
- R-Value Observed: 0.161
- Space Group: P 21 21 2
- Diffraction Data DOI: 10.18430/M3QC7W Protein Diffraction
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.02 | α = 90 |
| b = 94.047 | β = 90 |
| c = 47.036 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Deposited Date: 2011-07-18
- Released Date: 2011-09-14 Deposition Author(s): Cooper, D.R., Kudritska, M., Chruszcz, M., Savchenko, A., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)
