Download MendeleyStructure-based design of a new class of potent Bcl-2/Bcl-xL inhibitors
Zhou, H., Chen, J., Meagher, J.L., Aguilar, A., Bai, L., Liu, L., Yang, C.Y., Xin, C., Stuckey, J.A., Wang, S.To be published.
3SP7
Crystal Structure of Bcl-xL bound to BM903
- PDB DOI: https://doi.org/10.2210/pdb3SP7/pdb
- Classification: APOPTOSIS REGULATOR/INHIBITOR
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-07-01 Released: 2012-07-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.185
- R-Value Work: 0.164
- R-Value Observed: 0.165
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Bcl-2-like protein 1 | 172 | Homo sapiens | Mutation(s): 0 Gene Names: Bcl-xL, BCL2L, BCL2L1, BCLX |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q07817 (Homo sapiens) Explore Q07817 Go to UniProtKB: Q07817 | |||||
PHAROS: Q07817 GTEx: ENSG00000171552 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q07817 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 03B Query on 03B | B [auth A] | 5-(4-chlorophenyl)-4-{3-[4-(4-{[(4-{[(2R)-4-(dimethylamino)-1-(phenylsulfanyl)butan-2-yl]amino}-3-nitrophenyl)sulfonyl]amino}phenyl)piperazin-1-yl]phenyl}-1,2-dimethyl-1H-pyrrole-3-carboxylic acid C47 H50 Cl N7 O6 S2 IUXZRSUDCUOHPK-DIPNUNPCSA-N |  | ||
| ZN Query on ZN | C [auth A], D [auth A], E [auth A], F [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | G [auth A], H [auth A], I [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.185
- R-Value Work: 0.164
- R-Value Observed: 0.165
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 41.627 | α = 90 |
| b = 54.891 | β = 90 |
| c = 79.569 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
| BUSTER-TNT | refinement |
| PDB_EXTRACT | data extraction |
| MD2 | data collection |
| HKL-2000 | data reduction |
| BUSTER | refinement |
Entry History
Deposition Data
- Released Date: 2012-07-04 Deposition Author(s): Meagher, J.L., Stuckey, J.A.
Revision History (Full details and data files)
- Version 1.0: 2012-07-04
Type: Initial release - Version 1.1: 2017-07-26
Changes: Refinement description, Source and taxonomy - Version 1.2: 2017-11-08
Changes: Refinement description - Version 1.3: 2024-02-28
Changes: Data collection, Database references, Derived calculations
