Protease Inhibitors that protrude out from substrate envelope are more susceptible to developing drug resistance
Altman, M.D., Nalam, M.N.L., Ali, A., Cao, H., Rana, T.M., Schiffer, C.A., Tidor, B.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Protease | 99 | Human immunodeficiency virus 1 | Mutation(s): 1  Gene Names: gag-pol, pol | ||
UniProt | |||||
Find proteins for O38732 (Human immunodeficiency virus 1) Explore O38732  Go to UniProtKB:  O38732 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O38732 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
K83 Query on K83 | G [auth A] | 3-hydroxy-N-[(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]benzamide C28 H34 N2 O6 S QMZQZXVEFMMDKK-RRPNLBNLSA-N | |||
PO4 Query on PO4 | C [auth A], D [auth A], E [auth A], H [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
ACT Query on ACT | F [auth A], I [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |
Entity ID: 4 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000951 (K83) Query on PRD_000951 | G [auth A] | 3-HYDROXY-N-[(2S,3R)-3-HYDROXY-4-{[(4-METHOXYPHENYL)SULFONYL](2-METHYLPROPYL)AMINO}-1-PHENYLBUTAN-2-YL]BENZAMIDE | Peptide-like / Inhibitor |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 50.731 | α = 90 |
b = 57.739 | β = 90 |
c = 61.769 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
BioCARS-developed | data collection |
HKL-2000 | data reduction |
AMoRE | phasing |