Protease Inhibitors that protrude out from substrate envelope are more susceptible to developing drug resistance
Altman, M.D., Nalam, M.N.L., Ali, A., Cao, H., Rana, T.M., Schiffer, C.A., Tidor, B.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protease | A, B | 99 | Human immunodeficiency virus 1 | Mutation(s): 1  Gene Names: gag-pol, pol | ![]() |
UniProt | |||||
Find proteins for O38732 (Human immunodeficiency virus 1) Explore O38732  Go to UniProtKB:  O38732 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O38732 | ||||
Protein Feature ViewExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
F72 Query on F72 | G [auth B] | N-{(2S,3R)-4-[(1,3-benzothiazol-6-ylsulfonyl)(cyclohexylmethyl)amino]-3-hydroxy-1-phenylbutan-2-yl}-3-hydroxybenzamide C31 H35 N3 O5 S2 ZALSSBYFYBCJII-URLMMPGGSA-N | Ligand Interaction | ||
PO4 Query on PO4 | C [auth A], D [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | Ligand Interaction | ||
ACT Query on ACT | E [auth A], F [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | Ligand Interaction |
Entity ID: 4 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000947 (F72) Query on PRD_000947 | G [auth B] | N-{(2S,3R)-4-[(1,3-BENZOTHIAZOL-6-YLSULFONYL)(CYCLOHEXYLMETHYL)AMINO]-3-HYDROXY-1-PHENYLBUTAN-2-YL}-3-HYDROXYBENZAMIDE | Peptide-like / Inhibitor | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 50.893 | α = 90 |
b = 58.004 | β = 90 |
c = 61.742 | γ = 90 |
Software Name | Purpose |
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DENZO | data reduction |
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
AMoRE | phasing |