3S9U

Bacillus anthracis Dihydrofolate Reductase bound to propargyl-linked TMP analog, UCP120J


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure-Activity Studies of Heterocyclic Propargyl-linked TMP Analogs Targeting Bacillus anthracis Dihydrofolate Reductase

Anderson, A.C.Beierlein, J.M.Viswanathan, K.Wright, D.L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dihydrofolate reductase
A, B
165Bacillus anthracisMutation(s): 1 
Gene Names: dfrA
EC: 1.5.1.3
Find proteins for Q81R22 (Bacillus anthracis)
Go to UniProtKB:  Q81R22
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAP
Query on NAP

Download SDF File 
Download CCD File 
A, B
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
 Ligand Interaction
5DR
Query on 5DR

Download SDF File 
Download CCD File 
A, B
6-ethyl-5-[3-(4-methoxybiphenyl-3-yl)prop-1-yn-1-yl]pyrimidine-2,4-diamine
C22 H22 N4 O
LBQMRSNKEUNXMT-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
5DRKi: 1210 nM (99) BINDINGDB
5DRIC50: 3600 nM (99) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.190 
  • Space Group: P 42
Unit Cell:
Length (Å)Angle (°)
a = 78.187α = 90.00
b = 78.187β = 90.00
c = 67.094γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
CBASSdata collection
HKL-2000data scaling
PHASERphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-06-13
    Type: Initial release