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Download EndnoteCrystal structure of a Member of DUF3298 family (BF2082) from Bacteroides fragilis NCTC 9343 at 2.30 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3S5T
Crystal structure of a member of duf3298 family (BF2082) from bacteroides fragilis nctc 9343 at 2.30 A resolution
- DOI: 10.2210/pdb3S5T/pdb
- Classification: Structural Genomics unknown function
- Organism(s): Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)
- Expression System: Escherichia coli
- Deposited: 2011-05-23 Released: 2011-06-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.3 Å
- R-Value Free: 0.208
- R-Value Work: 0.186
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| DUF3298 family protein | A | 265 | Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) | Mutation(s): 0 |
Find proteins for Q5LDM9 (Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)) Go to UniProtKB: Q5LDM9 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | A | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | Ligand Interaction | |
| CL Query on CL | A | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| MPD Query on MPD | A | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.3 Å
- R-Value Free: 0.208
- R-Value Work: 0.186
- Space Group: P 65 2 2
- Diffraction Data DOI:
10.18430/M33S5T Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 98.330 | α = 90.00 |
| b = 98.330 | β = 90.00 |
| c = 121.130 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| SHARP | phasing |
| BUSTER | refinement |
| BUSTER-TNT | refinement |
| MOSFLM | data reduction |
| MolProbity | model building |
| SCALA | data scaling |
| SHELXD | phasing |
| SHELX | phasing |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Deposited Date: 2011-05-23
- Released Date: 2011-06-29
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2011-06-29
Type: Initial release - Version 1.1: 2011-07-13
Type: Version format compliance - Version 1.2: 2011-07-20
Type: Structure summary - Version 1.3: 2011-11-16
Type: Structure summary - Version 1.4: 2017-10-25
Type: Author supporting evidence, Refinement description - Version 1.5: 2018-01-24
Type: Database references
