Macromolecule Content

Total Structure Weight: 133.48 kDa
Atom Count: 8,929
Modelled Residue Count: 1,116
Deposited Residue Count: 1,216
Unique protein chains: 1

3S40

The crystal structure of a diacylglycerol kinases from Bacillus anthracis str. Sterne

PDB DOI: https://doi.org/10.2210/pdb3S40/pdb

Classification: TRANSFERASE
Organism(s): Bacillus anthracis str. Sterne
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-05-18 Released: 2011-06-01
Deposition Author(s): Tan, K., Zhang, R., Xu, X., Cui, H., Peterson, S., Savchenko, A., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.238
R-Value Work: 0.175
R-Value Observed: 0.178

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The crystal structure of a diacylglycerol kinases from Bacillus anthracis str. Sterne

Tan, K., Zhang, R., Xu, X., Cui, H., Peterson, S., Savchenko, A., Anderson, W.F., Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
diacylglycerol kinase	A, B, C, D	304	Bacillus anthracis str. Sterne	Mutation(s): 0 Gene Names: BAS4713, BA_5075, GBAA_5075
UniProt
Find proteins for A0A6L8P1L2 (Bacillus anthracis) Explore A0A6L8P1L2 Go to UniProtKB: A0A6L8P1L2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A6L8P1L2
Protein Feature View Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.238
R-Value Work: 0.175
R-Value Observed: 0.178
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.608	α = 90
b = 130.758	β = 115.04
c = 72.794	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
MOLREP	phasing
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-06-01

Deposition Author(s):

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History (Full details and data files)

Version 1.0: 2011-06-01
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.