Crystal structure of dipeptidase from Streptomyces coelicolor complexed with phosphinate pseudodipeptide L-Leu-D-Glu
Fedorov, A.A., Fedorov, E.V., Cummings, J., Raushel, F.M., Almo, S.C.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
dipeptidase | 400 | Streptomyces coelicolor | Mutation(s): 0  Gene Names: SCO3058, SCBAC19G2.13c | ||
UniProt | |||||
Find proteins for Q93J45 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)) Explore Q93J45  Go to UniProtKB:  Q93J45 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q93J45 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
LDE Query on LDE | B [auth A] | (2R)-2-{[(S)-[(1R)-1-amino-3-methylbutyl](hydroxy)phosphoryl]methyl}pentanedioic acid C11 H22 N O6 P GANKYZVDRZVCGT-DTWKUNHWSA-N | |||
ZN Query on ZN | C [auth A], D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | E [auth A] F [auth A] G [auth A] H [auth A] I [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 96.871 | α = 90 |
b = 96.871 | β = 90 |
c = 104.76 | γ = 120 |
Software Name | Purpose |
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ADSC | data collection |
BALBES | phasing |
PHENIX | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |