3RY3

Putative solute-binding protein from Yersinia pestis.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Putative solute-binding protein from Yersinia pestis.

Osipiuk, J.Zhou, M.Kwon, K.Anderson, W.F.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative solute-binding protein
A, B
528Yersinia pestisGene Names: oppA4
Find proteins for Q7CJS8 (Yersinia pestis)
Go to UniProtKB:  Q7CJS8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
B
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 157.036α = 90.00
b = 171.322β = 90.00
c = 128.842γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-3000data reduction
SOLVEphasing
REFMACrefinement
DMphasing
SBC-Collectdata collection
DENZOdata reduction
SHELXDphasing
RESOLVEphasing
MLPHAREphasing
PHENIXrefinement
HKL-3000phasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-05-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-08
    Type: Refinement description