3RWR

Crystal structure of the human XRCC4-XLF complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.94 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.271 
  • R-Value Observed: 0.274 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of human XLF-XRCC4: assembly of a functional DNA repair complex

Andres, N.S.Wyman, C.Modesti, M.Junop, M.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA repair protein XRCC4
A, B, F, G, J, K, N, P, R, U, V, Y
163Homo sapiensMutation(s): 0 
Gene Names: XRCC4
Find proteins for Q13426 (Homo sapiens)
Go to UniProtKB:  Q13426
NIH Common Fund Data Resources
PHAROS  Q13426

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Non-homologous end-joining factor 1
D, E, H, I, L, M, O, Q, S, T, W, X
230Homo sapiensMutation(s): 0 
Gene Names: NHEJ1XLF
Find proteins for Q9H9Q4 (Homo sapiens)
Go to UniProtKB:  Q9H9Q4
NIH Common Fund Data Resources
PHAROS  Q9H9Q4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
TBR
Query on TBR

Download CCD File 
D, H, J, M, P, V, X, Y
HEXATANTALUM DODECABROMIDE
Br12 Ta6
YWYIQTPPCOBSGN-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.94 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.271 
  • R-Value Observed: 0.274 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 745.379α = 90
b = 149.585β = 94.72
c = 80.475γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXmodel building
CNSrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing
CBASSdata collection

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-12-07
    Type: Initial release
  • Version 1.1: 2014-10-29
    Changes: Structure summary
  • Version 1.2: 2017-10-25
    Changes: Author supporting evidence
  • Version 1.3: 2019-07-17
    Changes: Data collection, Refinement description