3RWR

Crystal structure of the human XRCC4-XLF complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.943 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.271 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structure of human XLF-XRCC4: assembly of a functional DNA repair complex

Andres, N.S.Wyman, C.Modesti, M.Junop, M.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA repair protein XRCC4
A, B, F, G, J, K, N, P, R, V, U, Y
163Homo sapiensMutation(s): 0 
Gene Names: XRCC4
Find proteins for Q13426 (Homo sapiens)
Go to Gene View: XRCC4
Go to UniProtKB:  Q13426
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Non-homologous end-joining factor 1
D, E, H, I, L, M, O, Q, S, W, T, X
230Homo sapiensMutation(s): 0 
Gene Names: NHEJ1 (XLF)
Find proteins for Q9H9Q4 (Homo sapiens)
Go to Gene View: NHEJ1
Go to UniProtKB:  Q9H9Q4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
TBR
Query on TBR

Download SDF File 
Download CCD File 
D, H, J, M, P, V, X, Y
HEXATANTALUM DODECABROMIDE
DODECABROMOHEXATANTALUM
Br12 Ta6
YWYIQTPPCOBSGN-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.943 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.271 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 745.379α = 90.00
b = 149.585β = 94.72
c = 80.475γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
HKL-2000data scaling
CBASSdata collection
PHENIXmodel building
HKL-2000data reduction
CNSrefinement
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-12-07
    Type: Initial release
  • Version 1.1: 2014-10-29
    Type: Structure summary
  • Version 1.2: 2017-10-25
    Type: Author supporting evidence
  • Version 1.3: 2019-07-17
    Type: Data collection, Refinement description