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Download EndnoteCrystal Structure of Aminotransferase Class I and II from Veillonella parvula
Kim, Y., Hatzos-Skintges, C., Clancy, S., Joachimiak, A.To be published.
3RQ1
Crystal Structure of Aminotransferase Class I and II from Veillonella parvula
- DOI: 10.2210/pdb3RQ1/pdb
- Classification: TRANSFERASE
- Organism(s): Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3)
- Expression System: Escherichia coli
- Deposited: 2011-04-27 Released: 2011-05-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.2 Å
- R-Value Free: 0.263
- R-Value Work: 0.190
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Aminotransferase class I and II | A, B, C, D | 418 | Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) | Mutation(s): 0 |
Find proteins for D1BN29 (Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3)) Go to UniProtKB: D1BN29 | ||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AKG Query on AKG | C | 2-OXOGLUTARIC ACID C5 H6 O5 KPGXRSRHYNQIFN-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | C | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| GOL Query on GOL | A, B, C, D | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| OAA Query on OAA | A, B, C | OXALOACETATE ION C4 H3 O5 KHPXUQMNIQBQEV-UHFFFAOYSA-M |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.2 Å
- R-Value Free: 0.263
- R-Value Work: 0.190
- Space Group: P 1
- Diffraction Data DOI:
10.18430/M33RQ1 Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 55.991 | α = 102.40 |
| b = 81.057 | β = 101.37 |
| c = 106.395 | γ = 102.95 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| PHENIX | refinement |
| HKL-3000 | data scaling |
| BUCCANEER | model building |
| BUCCANEER | phasing |
| HKL-3000 | data reduction |
| SHELXS | phasing |
| HKL-3000 | phasing |
| MLPHARE | phasing |
Entry History
Deposition Data
- Deposited Date: 2011-04-27
- Released Date: 2011-05-18
- Deposition Author(s): Kim, Y., Hatzos-Skintges, C., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
