Crystal Structure of Aminotransferase Class I and II from Veillonella parvula
Kim, Y., Hatzos-Skintges, C., Clancy, S., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Aminotransferase class I and II | A, B, C, D | 418 | Veillonella parvula DSM 2008 | Mutation(s): 0  Gene Names: Vpar_1105 | ![]() |
UniProt | |||||
Find proteins for D1BN29 (Veillonella parvula (strain ATCC 10790 / DSM 2008 / CCUG 5123 / JCM 12972 / NCTC 11810 / Te3)) Explore D1BN29  Go to UniProtKB:  D1BN29 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | D1BN29 | ||||
Protein Feature ViewExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
AKG Query on AKG | M [auth C] | 2-OXOGLUTARIC ACID C5 H6 O5 KPGXRSRHYNQIFN-UHFFFAOYSA-N | Ligand Interaction | ||
OAA Query on OAA | F [auth A], I [auth B], O [auth C] | OXALOACETATE ION C4 H3 O5 KHPXUQMNIQBQEV-UHFFFAOYSA-M | Ligand Interaction | ||
GOL Query on GOL | E [auth A], G [auth A], H [auth A], J [auth B], K [auth C], | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | Ligand Interaction | ||
CL Query on CL | L [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | Ligand Interaction |
Modified Residues  1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 55.991 | α = 102.4 |
b = 81.057 | β = 101.37 |
c = 106.395 | γ = 102.95 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
HKL-3000 | data collection |
HKL-3000 | phasing |
SHELXS | phasing |
MLPHARE | phasing |
BUCCANEER | model building |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
BUCCANEER | phasing |