3RPL
D-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-bisphosphatase of Synechocystis sp. PCC 6803 in complex with FRUCTOSE-1,6-BISPHOSPHATE
- PDB DOI: https://doi.org/10.2210/pdb3RPL/pdb
- Classification: HYDROLASE
- Organism(s): Synechocystis sp. PCC 6803
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2011-04-26 Released: 2012-05-02 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.207 
- R-Value Work: 0.166 
- R-Value Observed: 0.168 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
D-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-bisphosphatase | 379 | Synechocystis sp. PCC 6803 | Mutation(s): 0  Gene Names: slr2094 EC: 3.1.3.11 (PDB Primary Data), 3.1.3.37 (PDB Primary Data) | ||
UniProt | |||||
Find proteins for P73922 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P73922  Go to UniProtKB:  P73922 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P73922 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
D-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-bisphosphatase | 379 | Synechocystis sp. PCC 6803 | Mutation(s): 0  Gene Names: slr2094 EC: 3.1.3.11 (PDB Primary Data), 3.1.3.37 (PDB Primary Data) | ||
UniProt | |||||
Find proteins for P73922 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P73922  Go to UniProtKB:  P73922 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P73922 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 6 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
AMP Query on AMP | I [auth A], IA [auth D], N [auth B], Z [auth C] | ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P UDMBCSSLTHHNCD-KQYNXXCUSA-N | |||
FBP Query on FBP | H [auth A], MA [auth D], R [auth B], Y [auth C] | 1,6-di-O-phosphono-beta-D-fructofuranose C6 H14 O12 P2 RNBGYGVWRKECFJ-ARQDHWQXSA-N | |||
SO4 Query on SO4 | AA [auth C] BA [auth C] CA [auth C] J [auth A] K [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | HA [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CL Query on CL | DA [auth C] EA [auth C] FA [auth C] GA [auth C] M [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG Query on MG | E [auth A] F [auth A] G [auth A] JA [auth D] KA [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
CSO Query on CSO | B | L-PEPTIDE LINKING | C3 H7 N O3 S | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.207 
- R-Value Work: 0.166 
- R-Value Observed: 0.168 
- Space Group: P 65
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 145.222 | α = 90 |
b = 145.222 | β = 90 |
c = 169.104 | γ = 120 |
Software Name | Purpose |
---|---|
CrysalisPro | data collection |
MOLREP | phasing |
PHENIX | refinement |
CrysalisPro | data reduction |
SCALA | data scaling |
Entry History 
Deposition Data
- Released Date: 2012-05-02  Deposition Author(s): Hu, X., Hui, D., Lingling, F., Jian, W.
Revision History (Full details and data files)
- Version 1.0: 2012-05-02
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description, Structure summary - Version 1.3: 2023-12-06
Changes: Data collection