3RPF

Protein-protein complex of subunit 1 and 2 of Molybdopterin-converting factor from Helicobacter pylori 26695


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Protein-protein complex of subunit 1 and 2 of Molybdopterin-converting factor from Helicobacter pylori 26695

Stein, A.Marshall, N.Jedrzejczak, R.Babnigg, G.Joachimiak, A.Nocek, B.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Molybdopterin synthase catalytic subunit
A, B
148Helicobacter pylori (strain ATCC 700392 / 26695)Mutation(s): 0 
Gene Names: moaE
EC: 2.8.1.12
Find proteins for P56422 (Helicobacter pylori (strain ATCC 700392 / 26695))
Go to UniProtKB:  P56422
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Molybdopterin converting factor, subunit 1 (MoaD)
C, D
74Helicobacter pylori (strain ATCC 700392 / 26695)Mutation(s): 0 
Find proteins for O25482 (Helicobacter pylori (strain ATCC 700392 / 26695))
Go to UniProtKB:  O25482
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.202 
  • Space Group: F 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 88.187α = 90.00
b = 127.582β = 90.00
c = 187.945γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data reduction
PHENIXrefinement
PHENIXmodel building
PHENIXphasing
SBC-Collectdata collection
HKL-3000data scaling
ARP/wARPmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-06-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2012-01-11
    Type: Structure summary