3RPC

The crystal structure of a possible metal-dependent hydrolase from Veillonella parvula DSM 2008


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.158 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The crystal structure of a possible metal-dependent hydrolase from Veillonella parvula DSM 2008

Tan, K.Marshall, N.Clancy, S.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
possible metal-dependent hydrolase
A, B, C, D
264Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3)Mutation(s): 0 
Find proteins for D1BQT4 (Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3))
Go to UniProtKB:  D1BQT4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C, D
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.158 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 85.859α = 90.00
b = 97.104β = 90.00
c = 123.352γ = 90.00
Software Package:
Software NamePurpose
SHELXDphasing
DMphasing
ARPmodel building
WARPmodel building
DMmodel building
PHENIXrefinement
HKL-3000data scaling
SBC-Collectdata collection
HKL-3000data reduction
MLPHAREphasing
HKL-3000phasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-05-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance