3RNK

Crystal structure of the complex between mouse PD-1 mutant and PD-L2 IgV domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.195 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of the complex between mouse PD-1 mutant and PD-L2 IgV domain

Lazar-Molnar, E.Ramagopal, U.A.Cao, E.Nathenson, S.G.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Programmed cell death protein 1
A
117Mus musculusMutation(s): 2 
Gene Names: Pdcd1 (Pd1)
Find proteins for Q02242 (Mus musculus)
Go to UniProtKB:  Q02242
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Programmed cell death 1 ligand 2
B
104Mus musculusMutation(s): 0 
Gene Names: Pdcd1lg2 (B7dc, Btdc, Cd273, Pdl2)
Find proteins for Q9WUL5 (Mus musculus)
Go to UniProtKB:  Q9WUL5
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.195 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 36.057α = 90.00
b = 60.246β = 90.00
c = 80.087γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
CBASSdata collection
MOLREPphasing
HKL-2000data scaling
REFMACrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-06-01
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2013-12-25
    Type: Other
  • Version 1.3: 2018-01-24
    Type: Database references, Structure summary