3RND

W116I-OYE1 complexed with 2-(Hydroxymethyl)-cyclopent-2-enone


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.168 
  • R-Value Work: 0.150 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Biocatalytic Reductions of Baylis-Hillman Adducts

Walton, A.Z.Conerly, W.C.Pompeu, Y.A.Sullivan, B.T.Stewart, J.D.

(2011) ACS Catalysis --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NADPH dehydrogenase 1
A
399Saccharomyces pastorianusGene Names: OYE1
EC: 1.6.99.1
Find proteins for Q02899 (Saccharomyces pastorianus)
Go to UniProtKB:  Q02899
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMN
Query on FMN

Download SDF File 
Download CCD File 
A
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
3RN
Query on 3RN

Download SDF File 
Download CCD File 
A
2-(hydroxymethyl)cyclopent-2-en-1-one
C6 H8 O2
DQTFESRTIZHRRO-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.168 
  • R-Value Work: 0.150 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 141.180α = 90.00
b = 141.180β = 90.00
c = 42.789γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXmodel building
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing
CBASSdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-08-03
    Type: Initial release
  • Version 1.1: 2011-08-17
    Type: Derived calculations
  • Version 1.2: 2011-11-16
    Type: Atomic model