3RKV | pdb_00003rkv

C-terminal domain of protein C56C10.10, a putative peptidylprolyl isomerase, from Caenorhabditis elegans

• PDB DOI: https://doi.org/10.2210/pdb3RKV/pdb

• Classification: ISOMERASE
• Organism(s): Caenorhabditis elegans
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2011-04-18 Released: 2011-05-04 
• Deposition Author(s): Osipiuk, J., Tesar, C., Gu, M., Van Oosten-Hawle, P., Morimoto, R.I., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.41 Å
• R-Value Free: 
  0.300 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.237 (Depositor), 0.230 (DCC) 
• R-Value Observed: 
  0.240 (Depositor) 

Starting Model: experimental

Literature

C-terminal domain of protein C56C10.10, a putative peptidylprolyl isomerase, from Caenorhabditis elegans

Osipiuk, J., Tesar, C., Gu, M., Van Oosten-Hawle, P., Morimoto, R.I., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 18.8 kDa 
• Atom Count: 1,211 
• Modeled Residue Count: 147 
• Deposited Residue Count: 162 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
putative peptidylprolyl isomerase	A	162	Caenorhabditis elegans	Mutation(s): 0  Gene Names: C56C10.10
UniProt
Find proteins for Q18888 (Caenorhabditis elegans) Explore Q18888  Go to UniProtKB:  Q18888

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.41 Å
• R-Value Free:  0.300 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.237 (Depositor), 0.230 (DCC) 
• R-Value Observed: 0.240 (Depositor) 

Diffraction Data: https://doi.org/10.18430/M33RKV

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.025	α = 90
b = 84.674	β = 90
c = 110.731	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
MOLREP	phasing
HKL-3000	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-05-04 
Deposition Author(s): Osipiuk, J., Tesar, C., Gu, M., Van Oosten-Hawle, P., Morimoto, R.I., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2011-05-04
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-08
  Changes: Refinement description
• Version 1.3: 2023-09-13
  Changes: Data collection, Database references, Refinement description