3RJQ

Crystal structure of anti-HIV llama VHH antibody A12 in complex with C186 gp120


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.601 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.255 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of anti-HIV A12 VHH of llama antibody in complex with C1086 gp120

Chen, L.McLellan, J.S.Kwon, Y.D.Schmidt, S.Wu, X.Zhou, T.Yang, Y.Zhang, B.Forsman, A.Weiss, R.A.Verrips, T.Mascola, J.Kwong, P.D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
C186 gp120
A
382N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Llama VHH A12
B
143N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download SDF File 
Download CCD File 
A
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.601 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.255 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 66.600α = 90.00
b = 66.600β = 90.00
c = 266.920γ = 90.00
Software Package:
Software NamePurpose
SERGUIdata collection
HKL-2000data scaling
PHASERphasing
HKL-2000data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-05-02
    Type: Initial release
  • Version 1.1: 2012-06-13
    Type: Database references
  • Version 1.2: 2012-09-12
    Type: Structure summary